species:   Cocin
pid:       PID1279
parent:    cci-milR-24
paralog:   
locus:     scaffold_302:7795-7849
matures:   ['UGAAUCGCUAUCUCCGAUGGU', 'CGUCCGAGAUUCCGAGUCACUGACUG']
srr:       SRR9972091
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972091.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972091.cram scaffold_302:7795-7849

2 out of bounds
41 alignments
31 proper strand
31 stranded perfect matches

*****************             ************************ 
UGAAUCGCUAUCUCCGAUGGUCUGUCUCCGUCCGAGAUUCCGAGUCACUGACUGG
(((.(((..(((((.(((((.......))))).)))))..))).)))........
UGAAUCGCUAUCUCCGAUGGU---------------------------------- l=21 a=1 c
----------------------------CGUCCGAGAUUCCGAGUCACUGACUG- l=26 a=0 c*
--------------------------------CGAGAUUCCGAGUCACUGACUG- l=22 a=28 ma
------------------------------------------------------- l=0 a=0 ma*

----------------------------------AGAUUCCGAGUCACUGACUG- l=20 a=1 
--------------------------------CGAGAUUCCGAGUCACUGACUG- l=22 a=28 (ma)
UGAAUCGCUAUCUCCGAUG------------------------------------ l=19 a=1 
UGAAUCGCUAUCUCCGAUGGU---------------------------------- l=21 a=1 (c)

mb-00110
ax-0001010
ku-01
ss-101110101010
fn-101
